SEMANTIC SEGMENTATION OF AGRICULTURAL FIELD ANOMALY PATTERNS IN AERIAL IMAGES USING U-NET
https://doi.org/10.55452/1998-6688-2026-23-3-362-377
Abstract
Precision agriculture requires efficient monitoring of large agricultural fields with the aim that crop anomalies can be identified and spatially located as early as possible to enable targeted and timely field management. The traditional in-field inspection is time-consuming, tedious and measures only a small number of points. Deep learning technologies are coupled with unmanned aerial vehicles (UAVs) to create the opportunity to automate highresolution agricultural imagery. This work examines a task specific U-Net approach to multi label segmentation of agricultural anomaly patterns, but not a novel network architecture, and rather emphasizes the impact of practical design decisions. The evaluated configuration has four-channel RGB-NIR (NRGB) input, uses sigmoid-based multilabel prediction, and uses a combined Binary Cross-Entropy (BCE) and Dice loss. The experiments are carried out on the Agriculture-Vision 2021 benchmark dataset with over 21,000 labeled aerial images of eight agriculture anomaly classes. To isolate the contributions of NIR channel and Dice loss component, a controlled ablation study is performed, and additional experiments compare the resulting configuration to an identical experiment protocol against the standard U-Net, FCN, SegNet and a modern segmentation baseline. The performance is measured by Intersection over Union (IoU) and mean Intersection over Union (mIoU) on each class and the overall mean, respectively. Results show the effectiveness of NIR information and Dice-based loss for anomaly segmentation in agriculture and the performance of a relatively simple U-Net-based configuration on the benchmark dataset. The results validate the potential of using task-specific U-Net structure for automated UAV monitoring in agriculture and demonstrate individual input and loss-function contribution to the task.
Keywords
About the Authors
A. G. SerekKazakhstan
PhD, Associate Professor
Astana
F. N. Abdoldina
Kazakhstan
Cand.Tech.Sc.
Almaty
E. S. Vitulyova
Kazakhstan
PhD, Senior Researcher
Almaty
N. A. Shapay
Kazakhstan
Master student
Astana
A. A. Oksenenko
Kazakhstan
Bachelor
Almaty
Y. I. Kuchin
Kazakhstan
M.Sc., Senior Researcher
Almaty
References
1. Omia, E., Bae, H., Park, E., Kim, M.S., Baek, I., Kabenge I., and Cho, B.-K. Remote sensing in field crop monitoring: A comprehensive review of sensor systems, data analyses and recent advances, Remote Sensing, 15 (2), 354 (2023). https://doi.org/10.3390/rs15020354
2. Siddiquee, K.N.E.A., Islam, M.S., Singh, N., Gunjan, V.K., Yong, W.H., Huda, M.N., and Naik, D.B. Development of algorithms for an IoT-based smart agriculture monitoring system, Wireless Communications and Mobile Computing, 2022, 7372053 (2022). https://doi.org/10.1155/2022/7372053
3. Silva, J.A.O.S., Siqueira, V.S.d., Mesquita, M., Vale, L.S.R., Silva, J.L.B.d., Silva, M.V.d., Lemos, J.P.B., Lacerda, L.N., Ferrarezi, R.S., and Oliveira, H.F.E.d. Artificial intelligence applied to support agronomic decisions for the automatic aerial analysis images captured by UAV: A systematic review, Agronomy, 14 (11), 2697 (2024). https://doi.org/10.3390/agronomy14112697
4. Agrawal, J. and Arafat, M.Y. Transforming farming: A review of AI-powered UAV technologies in precision agriculture, Drones, 8 (11), 664 (2024). https://doi.org/10.3390/drones8110664
5. Serek, A., Abdoldina, F., Smurygin, V.V., Asylbek, M., and Nursultan, K. Siamese Residual U-Net With ASPP for Satellite Image Change Detection, IEEE Access, 14, 114802–114816 (2026). https://doi.org/10.1109/ACCESS.2026.3714305
6. Serek, A., Abdoldina, F., Asylbek, M., Smurygin, V., and Nabiyeva, G. CTA-Net: A Cross-Temporal Attention Network for Change Detection in Remote Sensing Imagery, Big Data and Cognitive Computing, 10 (7), 225 (2026). https://doi.org/10.3390/bdcc10070225
7. Kali, D., Kashkimbayeva, N., Kemel, A., Mirzagalikova, B., and Basheyeva, Z. Development of a System for Monitoring and Managing Climate-Dependent Process Risks Based on Hidden Markov Models (Using Grain Crop Yields as an Example), Eastern-European Journal of Enterprise Technologies, 2 (3(140)), 15–26 (2026). https://doi.org/10.15587/1729-4061.2026.359355
8. Zhu, H., Lin, C., Liu, G., Wang, D., Qin, S., Li, A., Xu, J.-L., and He, Y. Intelligent Agriculture: Deep Learning in UAV-Based Remote Sensing Imagery for Crop Diseases and Pests Detection, Frontiers in Plant Science, 15, 1435016 (2024). https://doi.org/10.3389/fpls.2024.1435016
9. Taha, M.F., Abdalla, A., ElMasry, G., Gouda, M., Zhou, L., and Zhao, N. Using Deep Convolutional Neural Network for Image-Based Diagnosis of Nutrient Deficiencies in Plants Grown in Aquaponics, Chemosensors, 10 (2), 45 (2022). https://doi.org/10.3390/chemosensors10020045
10. Hasan, A.M., Sohel, F., Diepeveen, D., Laga, H., and Jones, M.G. A Survey of Deep Learning Techniques for Weed Detection from Images, Computers and Electronics in Agriculture, 184, 106067 (2021). https://doi.org/10.1016/j.compag.2021.106067
11. Su, D., Kong, H., Qiao, Y., and Sukkarieh, S. Data Augmentation for Deep Learning Based Semantic Segmentation and Crop-Weed Classification in Agricultural Robotics, Computers and Electronics in Agriculture, 190, 106418 (2021). https://doi.org/10.1016/j.compag.2021.106418
12. Sishodia, R.P., Ray, R.L., and Singh, S.K. Applications of Remote Sensing in Precision Agriculture: a Review, Remote Sensing, 12 (19), 3136 (2020). https://doi.org/10.3390/rs12193136
13. Zhang, Z., Boubin, J., Stewart, C., and Khanal, S. Whole-Field Reinforcement Learning: A Fully Autonomous Aerial Scouting Method for Precision Agriculture, Sensors, 20 (22), 6585 (2020). https://doi.org/10.3390/s20226585
14. Yang, G., Liu, J., Zhao, J., Li, Z., Huang, Y., Yu, D., Xu, B., Yang, X., Zhu, D., Zhang, X., and Zhang, R. Unmanned Aerial Vehicle Remote Sensing for Field-Based Crop Phenotyping: Current Status and Perspectives, Frontiers in Plant Science, 8, 1111 (2017). https://doi.org/10.3389/fpls.2017.01111
15. Mogili, U.R. and Deepak, B.B.V.L. Review on Application of Drone Systems in Precision Agriculture, Procedia Computer Science, 133, 502–509 (2018). https://doi.org/10.1016/j.procs.2018.07.063
16. Tetila, E.C., Machado, B.B., Astolfi, G., Belete, N.A.D.S., Amorim, W.P., Roel, A.R., and Pistori, H. Detection and Classification of Soybean Pests Using Deep Learning with UAV Images, Computers and Electronics in Agriculture, 179, 105836 (2020). https://doi.org/10.1016/j.compag.2020.105836
17. Guo, Y., Liu, Y., Georgiou, T., and Lew, M.S. A Review of Semantic Segmentation Using Deep Neural Networks, International Journal of Multimedia Information Retrieval, 7 (2), 87–93 (2018). https://doi.org/10.1007/s13735-017-0141-z
18. Long, J., Shelhamer, E., and Darrell, T. Fully Convolutional Networks for Semantic Segmentation, Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 3431–3440 (2015). https:// doi.org/10.1109/CVPR.2015.7298965
19. Badrinarayanan, V., Kendall, A., and Cipolla, R. SegNet: a Deep Convolutional Encoder-Decoder Architecture for Image Segmentation, IEEE Transactions on Pattern Analysis and Machine Intelligence, 39 (12), 2481–2495 (2017). https://doi.org/10.1109/TPAMI.2016.2644615
20. Wang, L., Li, R., Zhang, C., Fang, S., Duan, C., Meng, X., and Atkinson, P.M. UNetFormer: a UNet-Like Transformer for Efficient Semantic Segmentation of Remote Sensing Urban Scene Imagery, ISPRS Journal of Photogrammetry and Remote Sensing, 190, 196–214 (2022). https://doi.org/10.1016/j.isprsjprs.2022.06.008
21. Ronneberger, O., Fischer, P., and Brox, T. U-Net: Convolutional Networks for Biomedical Image Segmentation, Medical Image Computing and Computer-Assisted Intervention, 9351, 234–241 (2015). https://doi.org/10.1007/978-3-319-24574-4_28
22. Wang, X., Jing, S., Dai, H., and Shi, A. High-Resolution Remote Sensing Images Semantic Segmentation Using Improved UNet and SegNet, Computers and Electrical Engineering, 108, 108734 (2023). https://doi.org/10.1016/j.compeleceng.2023.108734
23. Li, R., Zheng, S., Duan, C., Su, J., and Zhang, C. Multistage Attention ResU-Net for Semantic Segmentation of Fine-Resolution Remote Sensing Images, IEEE Geoscience and Remote Sensing Letters, 19, 1–5 (2022). https://doi.org/10.1109/LGRS.2021.3063381
24. He, X., Zhou, Y., Zhao, J., Zhang, D., Yao, R., and Xue, Y. Swin Transformer Embedding UNet for Remote Sensing Image Semantic Segmentation, IEEE Transactions on Geoscience and Remote Sensing, 60, 1–15 (2022). https://doi.org/10.1109/TGRS.2022.3144165
25. Tucker, C.J. Red and Photographic Infrared Linear Combinations for Monitoring Vegetation, Remote Sensing of Environment, 8 (2), 127–150 (1979). https://doi.org/10.1016/0034-4257(79)90013-0
26. Chiu, M.T., Xu, X., Wei, Y., Huang, Z., Schwing, A., Brunner, R., Khachatrian, H., Karapetyan, H., Dozier, I., Rose, G., Wilson, D., Tudor, A., Hovakimyan, N., Huang, T.S., and Shi, H. Agriculture-Vision: a Large Aerial Image Database for Agricultural Pattern Analysis, Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2828–2838 (2020). https://doi.org/10.1109/CVPR42600.2020.00290
27. Johnson, J.M. and Khoshgoftaar, T.M. Survey on Deep Learning with Class Imbalance, Journal of Big Data, 6 (1), 27 (2019). https://doi.org/10.1186/s40537-019-0192-5
28. Agriculture-Vision. Agriculture-Vision 2021 Dataset (2021). URL: https://www.agriculture-vision.com/agriculture-vision-2021/dataset-2021
29. Chen, L.-C., Papandreou, G., Schroff F., and Adam, H. Rethinking Atrous Convolution for Semantic Image Segmentation, arXiv preprint, arXiv:1706.05587 (2017). https://doi.org/10.48550/arXiv.1706.05587
30. Wang, H., Zhu, Y., Green, B., Adam, H., Yuille, A., and Chen, L.-C. Axial-DeepLab: Stand-Alone Axial-Attention for Panoptic Segmentation, Proceedings of the European Conference on Computer Vision, 108–126 (2020). https://doi.org/10.1007/978-3-030-58548-8_7
31. Liu, Z., Lin, Y., Cao, Y., Hu, H., Wei, Y., Zhang, Z., Lin, S., and Guo, B. Swin Transformer: Hierarchical Vision Transformer Using Shifted Windows, Proceedings of the IEEE/CVF International Conference on Computer Vision, 10012–10022 (2021). https://doi.org/10.1109/ICCV48922.2021.00986
32. Boursianis, A.D., Papadopoulou, M.S., Diamantoulakis, P., Liopa-Tsakalidi, A., Barouchas, P., Salahas, G., Karagiannidis, G., Wan, S., and Goudos, S.K. Internet of Things (IoT) and Agricultural Unmanned Aerial Vehicles (UAVs) in Smart Farming: a Comprehensive Review, Internet of Things, 18, 100187 (2022). https://doi.org/10.1016/j.iot.2020.100187
33. Garnot, V.S.F. and Landrieu, L. Panoptic Segmentation of Satellite Image Time Series with Convolutional Temporal Attention Networks, Proceedings of the IEEE/CVF International Conference on Computer Vision, 4872–4881 (2021). https://doi.org/10.1109/ICCV48922.2021.00483
Review
For citations:
Serek A.G., Abdoldina F.N., Vitulyova E.S., Shapay N.A., Oksenenko A.A., Kuchin Y.I. SEMANTIC SEGMENTATION OF AGRICULTURAL FIELD ANOMALY PATTERNS IN AERIAL IMAGES USING U-NET. Herald of the Kazakh-British Technical University. 2026;23(3):362-377. (In Russ.) https://doi.org/10.55452/1998-6688-2026-23-3-362-377
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