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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">kaz29</journal-id><journal-title-group><journal-title xml:lang="ru">Вестник Казахстанско-Британского технического университета</journal-title><trans-title-group xml:lang="en"><trans-title>Herald of the Kazakh-British Technical University</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">1998-6688</issn><issn pub-type="epub">2959-8109</issn><publisher><publisher-name>Казахстанско-Британский Технический Университет</publisher-name></publisher></journal-meta><article-meta><article-id custom-type="elpub" pub-id-type="custom">kaz29-210</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ФИЗИКО-МАТЕМАТИЧЕСКИЕ И ТЕХНИЧЕСКИЕ НАУКИ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>PHYSICAL, MATHEMATICAL AND TECHNICAL SCIENCES</subject></subj-group></article-categories><title-group><article-title>СЕМАНТИЧЕСКАЯ РОЛЕВАЯ МАРКИРОВКА ДЛЯ КЛИНИЧЕСКОГО ТЕКСТА НА КАЗАХСКОМ ЯЗЫКЕ</article-title><trans-title-group xml:lang="en"><trans-title>SEMANTIC ROLE MARKING FOR CLINICAL TEXT IN KAZAKH</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Джаксылыкова</surname><given-names>А. Б.</given-names></name><name name-style="western" xml:lang="en"><surname>Jaksylykova</surname><given-names>A. B.</given-names></name></name-alternatives><bio xml:lang="ru"><p>докторант</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Зияден</surname><given-names>А. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Ziyaden</surname><given-names>A. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>магистрант</p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Рахымбекулы</surname><given-names>Ж.</given-names></name><name name-style="western" xml:lang="en"><surname>Rahimbekuly</surname><given-names>Zh.</given-names></name></name-alternatives><bio xml:lang="ru"><p>магистрант</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Калиева</surname><given-names>А.</given-names></name><name name-style="western" xml:lang="en"><surname>Kaliyeva</surname><given-names>A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>заведующая</p></bio><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Комада</surname><given-names>П.</given-names></name><name name-style="western" xml:lang="en"><surname>Komada</surname><given-names>P.</given-names></name></name-alternatives><bio xml:lang="ru"><p>факультет электротехники и информатики</p></bio><xref ref-type="aff" rid="aff-4"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru">Казахский Национальный университет им. аль-Фараби<country>Казахстан</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru">АО «КБТУ»<country>Казахстан</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru">КГКП «Региональная инфекционная больница г. Талдыкорган»<country>Казахстан</country></aff></aff-alternatives><aff-alternatives id="aff-4"><aff xml:lang="ru">Технический университет «Люблинская политехника»<country>Польша</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2019</year></pub-date><pub-date pub-type="epub"><day>10</day><month>11</month><year>2021</year></pub-date><volume>16</volume><issue>4</issue><fpage>111</fpage><lpage>116</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Джаксылыкова А.Б., Зияден А.А., Рахымбекулы Ж., Калиева А., Комада П., 2021</copyright-statement><copyright-year>2021</copyright-year><copyright-holder xml:lang="ru">Джаксылыкова А.Б., Зияден А.А., Рахымбекулы Ж., Калиева А., Комада П.</copyright-holder><copyright-holder xml:lang="en">Jaksylykova A.B., Ziyaden A.A., Rahimbekuly Z., Kaliyeva A., Komada P.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://vestnik.kbtu.edu.kz/jour/article/view/210">https://vestnik.kbtu.edu.kz/jour/article/view/210</self-uri><abstract><p>Маркировка семантических ролей (SemanticRoleLabeling, SLR) извлекает поверхностное представление смыслов и их отношений из различных текстов, семантический слой важен для понимания естественного языка. Исследований в маркировке семантических ролей в области медицины было проведено мало, в основном, из-за отсутствия аннотированных клинических корпусов, особенно на русском языке. Целью настоящей работы является разработка каркаса маркировки семантических ролей для клинических заметок с  использованием корпуса, созданного практикующими врачами клиницистами, для повышения производительности и экономии затрат, а также повышения качества предиктивной медицины. Материалы и методы: в качестве набора данных целевого домена использовалась обезличенная база данных, собранная на основе клинической практики, в частности, по болезням желудочно-кишечного тракта, сердечно сосудистой системы и других. Записи были вручную проанализированы и помечены. Представлен каркас семантической разметки и приведен разбор применимости семантических ролей и их отношений относительно реальных клинических случаев.</p></abstract><trans-abstract xml:lang="en"><p>Semantic role labeling (SLR) extracts a superficial representation of meanings and their relationships from various texts, the semantic layer is important for understanding natural language. Few studies in the labeling of semantic roles have been conducted in the field of medicine, mainly due to the lack of annotated clinical buildings, especially in Russian. The aim of this work is to develop a framework for marking semantic roles for clinical notes using the corps created by practicing clinicians to increase productivity and save costs, as well as improve the quality of predictive medicine. Materials and methods: an anonymous database, collected on the basis of clinical practice, in particular, diseases of the gastrointestinal tract, cardiovascular system and others, was used as a data set of the target domain. Records were manually analyzed and tagged. The framework of semantic markup is presented and the analysis of the applicability of semantic roles and their relationships with respect to real clinical cases is given.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>семантическая ролевая маркировка</kwd><kwd>неглубокий семантический анализ</kwd><kwd>клиническая обработка естественного языка</kwd><kwd>адаптация домена</kwd></kwd-group><kwd-group xml:lang="en"><kwd>semantic role marking</kwd><kwd>shallow semantic analysis</kwd><kwd>clinical processing ofnatural language</kwd><kwd>domain adaptation</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Pradhan S. S., Ward W. H., Hacioglu K., et al. Shallow semantic parsing using support vector machines / In: Proceedings of Human Language Technology Conference of the North American Chapter of the Association for Computational Linguistics. - Boston, Massachusetts, USA: Association for Computational Linguistics July 21-26, 2004. - P. 233-240.</mixed-citation><mixed-citation xml:lang="en">Pradhan S. S., Ward W. H., Hacioglu K., et al. Shallow semantic parsing using support vector machines / In: Proceedings of Human Language Technology Conference of the North American Chapter of the Association for Computational Linguistics. - Boston, Massachusetts, USA: Association for Computational Linguistics July 21-26, 2004. - P. 233-240.</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Allen J. Natural Language Understanding. / 2nd ed. Menlo Park, CA: Benjamin / Cummings., 1995.</mixed-citation><mixed-citation xml:lang="en">Allen J. Natural Language Understanding. / 2nd ed. Menlo Park, CA: Benjamin / Cummings., 1995.</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Surdeanu M., Harabagiu S., Williams J., et al. Using predicate-argument structures for information extraction // In: Proceedings of the 41st Annual Meeting of the Association for Computational Linguistics. Sapporo, Japan: Association for Computational Linguistics July 7-12, 2003. - P. 8-15.</mixed-citation><mixed-citation xml:lang="en">Surdeanu M., Harabagiu S., Williams J., et al. Using predicate-argument structures for information extraction // In: Proceedings of the 41st Annual Meeting of the Association for Computational Linguistics. Sapporo, Japan: Association for Computational Linguistics July 7-12, 2003. - P. 8-15.</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Akane Y., Yusuke M., Tomoko O., et al. Automatic construction of predicate- argument structure patterns for biomedical information extraction. In: Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing. Seattle, Washington, USA: Association for Computational Linguistics July 22-23, 2006. - P. 284-292.</mixed-citation><mixed-citation xml:lang="en">Akane Y., Yusuke M., Tomoko O., et al. Automatic construction of predicate- argument structure patterns for biomedical information extraction. In: Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing. Seattle, Washington, USA: Association for Computational Linguistics July 22-23, 2006. - P. 284-292.</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Yakushiji A., Miyao Y., Tateisi Y., et al. Biomedical information extraction with predicate-argument structure patterns. In: Proceedings of the First International Symposium on Semantic Mining in Biomedicine. Hinxton, Cambridge, UK: European Bioinformatics Institute April 10-13, 2005. - P. 60-69.</mixed-citation><mixed-citation xml:lang="en">Yakushiji A., Miyao Y., Tateisi Y., et al. Biomedical information extraction with predicate-argument structure patterns. In: Proceedings of the First International Symposium on Semantic Mining in Biomedicine. Hinxton, Cambridge, UK: European Bioinformatics Institute April 10-13, 2005. - P. 60-69.</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Nguyen N. T. H., Miwa M., Tsuruoka Y., et al. Open information extraction from biomedical literature using predicate-argument structure patterns // In: Proceedings of the 5th International Symposium on Languages in Biology and Medicine. Zurich, Switzerland December 12-13, 2013.</mixed-citation><mixed-citation xml:lang="en">Nguyen N. T. H., Miwa M., Tsuruoka Y., et al. Open information extraction from biomedical literature using predicate-argument structure patterns // In: Proceedings of the 5th International Symposium on Languages in Biology and Medicine. Zurich, Switzerland December 12-13, 2013.</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Wattarujeekrit T., Shah P. K., Collier N. PASBio: predicate-argument structures for event extraction in molecular biology. BMC Bioinformatics 200. - P. 155.</mixed-citation><mixed-citation xml:lang="en">Wattarujeekrit T., Shah P. K., Collier N. PASBio: predicate-argument structures for event extraction in molecular biology. BMC Bioinformatics 200. - P. 155.</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Kogan Y., Collier N., Pakhomov S., et al. Towards semantic role labeling &amp; IE in the medical literature. AMIA Symposium October 22-26, 2005.-P. 410-414.</mixed-citation><mixed-citation xml:lang="en">Kogan Y., Collier N., Pakhomov S., et al. Towards semantic role labeling &amp; IE in the medical literature. AMIA Symposium October 22-26, 2005.-P. 410-414.</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Shah P. K., Bork P. LSAT: learning about alternative transcripts in MEDLINE. Bioinformatics 2006. - P. 857-865.</mixed-citation><mixed-citation xml:lang="en">Shah P. K., Bork P. LSAT: learning about alternative transcripts in MEDLINE. Bioinformatics 2006. - P. 857-865.</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Bethard S., Lu Z., Martin J. H., et al. Semantic role labeling for protein transport predicates. BMC Bioinformatics 2008. - P. 277.</mixed-citation><mixed-citation xml:lang="en">Bethard S., Lu Z., Martin J. H., et al. Semantic role labeling for protein transport predicates. BMC Bioinformatics 2008. - P. 277.</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Barnickel T., Weston J., Collobert R., et al. Large scale application of neural network based semantic role labeling for automated relation extraction from biomedical texts. PloS One 2009. - P. e6393.</mixed-citation><mixed-citation xml:lang="en">Barnickel T., Weston J., Collobert R., et al. Large scale application of neural network based semantic role labeling for automated relation extraction from biomedical texts. PloS One 2009. - P. e6393.</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Paek H., Kogan Y., Thomas P., et al. Shallow semantic parsing of randomized controlled trial reports. AMIA Symposium November 11-15, 2006. - P. 604-608.</mixed-citation><mixed-citation xml:lang="en">Paek H., Kogan Y., Thomas P., et al. Shallow semantic parsing of randomized controlled trial reports. AMIA Symposium November 11-15, 2006. - P. 604-608.</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Albright D., Lanfranchi A., Fredriksen A., et al. Towards comprehensive syntactic and semantic annotations of the clinical narrative. J Am Med Inform Assoc. 2013. - P. 922-930.</mixed-citation><mixed-citation xml:lang="en">Albright D., Lanfranchi A., Fredriksen A., et al. Towards comprehensive syntactic and semantic annotations of the clinical narrative. J Am Med Inform Assoc. 2013. - P. 922-930.</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Wang Y., Pakhomov S., Melton G. B. Predicate argument structure frames for modeling information in operative notes. Stud Health Technol Inform. 2013. - P. 783-787.</mixed-citation><mixed-citation xml:lang="en">Wang Y., Pakhomov S., Melton G. B. Predicate argument structure frames for modeling information in operative notes. Stud Health Technol Inform. 2013. - P. 783-787.</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Meyers A., Reeves R., Macleod C., et al. Annotating noun argument structure for NomBank. In: Proceedings of the Language Resources and Evaluation Conference. Lisbon, Portugal: European Language Resources Association May 26-28, 2004. - P. 803-806.</mixed-citation><mixed-citation xml:lang="en">Meyers A., Reeves R., Macleod C., et al. Annotating noun argument structure for NomBank. In: Proceedings of the Language Resources and Evaluation Conference. Lisbon, Portugal: European Language Resources Association May 26-28, 2004. - P. 803-806.</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Meyers A., Reeves R., Macleod C., et al. The NomBank Project: an interim peport. In: Proceedings of the HLT-NAACL 2004 Workshop: Frontiers in Corpus Annotation. Boston, Massachusetts, USA: Association for Computational Linguistics May 6, 2004. - P. 24-31</mixed-citation><mixed-citation xml:lang="en">Meyers A., Reeves R., Macleod C., et al. The NomBank Project: an interim peport. In: Proceedings of the HLT-NAACL 2004 Workshop: Frontiers in Corpus Annotation. Boston, Massachusetts, USA: Association for Computational Linguistics May 6, 2004. - P. 24-31</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Palmer M., Gildea D., Kingsbury P. The proposition bank: an annotated corpus of semantic roles. Comput Linguist. 2005. - P. 71-106.</mixed-citation><mixed-citation xml:lang="en">Palmer M., Gildea D., Kingsbury P. The proposition bank: an annotated corpus of semantic roles. Comput Linguist. 2005. - P. 71-106.</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Rindflesch T. C., Fiszman M. The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. J Biomed Inform. 2003. - P. 462-477.</mixed-citation><mixed-citation xml:lang="en">Rindflesch T. C., Fiszman M. The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. J Biomed Inform. 2003. - P. 462-477.</mixed-citation></citation-alternatives></ref><ref id="cit19"><label>19</label><citation-alternatives><mixed-citation xml:lang="ru">Kilicoglu H., Shin D., Fiszman M., et al. SemMedDB: a PubMed-scale repository of biomedical semantic predications. Bioinformatics 2012. - P. 3158-3160.</mixed-citation><mixed-citation xml:lang="en">Kilicoglu H., Shin D., Fiszman M., et al. SemMedDB: a PubMed-scale repository of biomedical semantic predications. Bioinformatics 2012. - P. 3158-3160.</mixed-citation></citation-alternatives></ref><ref id="cit20"><label>20</label><citation-alternatives><mixed-citation xml:lang="ru">Sager N. Natural Language Information Processing. UK; Addison-Wesley,1981.</mixed-citation><mixed-citation xml:lang="en">Sager N. Natural Language Information Processing. UK; Addison-Wesley,1981.</mixed-citation></citation-alternatives></ref><ref id="cit21"><label>21</label><citation-alternatives><mixed-citation xml:lang="ru">Chen E. S., Hripcsak G., Xu H., et al. Automated acquisition of disease-drug knowledge from biomedical and clinical documents: an initial study. Jam Med Inform Assoc. 2008. - P. 87-98.</mixed-citation><mixed-citation xml:lang="en">Chen E. S., Hripcsak G., Xu H., et al. Automated acquisition of disease-drug knowledge from biomedical and clinical documents: an initial study. Jam Med Inform Assoc. 2008. - P. 87-98.</mixed-citation></citation-alternatives></ref><ref id="cit22"><label>22</label><citation-alternatives><mixed-citation xml:lang="ru">Simpson M. S., Demner-Fushman D. Biomedical text mining: a survey of recent progress. In: Aggarwal C. C., Zhai C., eds. Mining Text Data. USA; Springer 2012. - P. 465-517.</mixed-citation><mixed-citation xml:lang="en">Simpson M. S., Demner-Fushman D. Biomedical text mining: a survey of recent progress. In: Aggarwal C. C., Zhai C., eds. Mining Text Data. USA; Springer 2012. - P. 465-517.</mixed-citation></citation-alternatives></ref><ref id="cit23"><label>23</label><citation-alternatives><mixed-citation xml:lang="ru">Schuler K. K. VerbNet: A Broad-Coverage, Comprehensive Verb Lexicon. ProQuest Paper AAI3179808, 2005.</mixed-citation><mixed-citation xml:lang="en">Schuler K. K. VerbNet: A Broad-Coverage, Comprehensive Verb Lexicon. ProQuest Paper AAI3179808, 2005.</mixed-citation></citation-alternatives></ref><ref id="cit24"><label>24</label><citation-alternatives><mixed-citation xml:lang="ru">Ruppenhofer J., Ellsworth M., Petruck M. R. L., et al. FrameNet II: extended the ory and practice. http://framenet.icsi.berkeley.edu/ Accessed 10 March 2014.</mixed-citation><mixed-citation xml:lang="en">Ruppenhofer J., Ellsworth M., Petruck M. R. L., et al. FrameNet II: extended the ory and practice. http://framenet.icsi.berkeley.edu/ Accessed 10 March 2014.</mixed-citation></citation-alternatives></ref><ref id="cit25"><label>25</label><citation-alternatives><mixed-citation xml:lang="ru">Levin B. English Verb Classes and Alternations: a Preliminary Investigation. - Chicago, USA: University of Chicago Press 1993.</mixed-citation><mixed-citation xml:lang="en">Levin B. English Verb Classes and Alternations: a Preliminary Investigation. - Chicago, USA: University of Chicago Press 1993.</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
